CTF-BIND
(Causal Transcription Factor- Bayesian Integration of Network Dynamics)
(Causal Transcription Factor- Bayesian Integration of Network Dynamics)
Comprehensive coverage of abiotic stress responses in Arabidopsis thaliana
Analyze Heat Shock Factors and protein folding networks
Explore ABI5 and osmotic stress regulatory pathways
Investigate CBF/DREB cold-responsive elements
Discover SOS pathway and ion homeostasis networks
Click on network nodes to see gene details and regulatory connections!
CTF-BIND is a specialized database covering transcription factors involved in abiotic stress responses. It helps you understand how plants adapt to environmental challenges like heat, cold, salinity, and drought.
Explore dynamic gene networks and see how they change under different stress conditions.
Interactive transcription factor-gene regulatory network. Nodes represent TFs (circles) and target genes (squares). Edge thickness indicates binding strength.
Visualize expression patterns across timepoints with interactive bubble plots.
Access GO terms and biological processes with direct links to QuickGO.
Explore KEGG pathways and molecular routes for stress responses.
Examine binding sites and sequence logos for transcription factors.
Discover protein-protein binding partners and regulatory complexes.
Compare networks across different conditions and timepoints.
Access comprehensive datasets from CTF-BIND for your research. Download network data, regulatory modules, transcription factor-target relationships, and gene enrichment analyses in standard formats compatible with popular bioinformatics tools.
Complete regulatory network topology with node and edge attributes for network analysis tools.
Co-regulated gene modules and regulatory clusters identified through community detection algorithms.
Comprehensive transcription factor-target gene relationships with binding evidence and regulatory effects.
Gene Ontology and pathway enrichment results for stress-responsive gene sets.
| Source | Target | Interaction_Type | Binding_Score | Expression_Correlation |
|---|---|---|---|---|
| DREB2A | RD29A | activation | 0.87 | 0.76 |
| HSF1 | HSP70 | activation | 0.92 | 0.84 |
| CBF1 | COR15A | activation | 0.79 | 0.71 |
| SOS1 | NHX1 | activation | 0.83 | 0.68 |
Analyze your own sequences to predict transcription factor binding sites under specific conditions. Upload FASTA sequences and transcriptomic data to get binding predictions in minutes.